Laboratory

43 entities and 154 agent-callable operations in laboratory. Each operation is addressed as {mega_tool}/laboratory/{entity}/{operation} and carries the same permission check over MCP and REST.

`analyte`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private analyte catalog row.
`delete`	`entity_crud`	Delete an organization-private analyte row.
`list`	`entity_crud`	List analytes / measurands (global catalog ∪ org overrides).
`read`	`entity_crud`	Read a single analyte by id (global ∪ org-override scoped).
`update`	`entity_crud`	Partially update an organization-private analyte row.

`assay`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private assay definition catalog row.
`delete`	`entity_crud`	Delete an organization-private assay definition row.
`list`	`entity_crud`	List assay definitions (global catalog ∪ org overrides).
`read`	`entity_crud`	Read a single assay definition by id, embedding its ResultFieldSpecs (the shape a reading/ingest payload must satisfy).
`update`	`entity_crud`	Partially update an organization-private assay definition row.

`calibration`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an exact-organization calibration event row.
`list`	`entity_crud`	List calibration events in the current org (writes via calibration/record).
`read`	`entity_crud`	Read a single calibration event by id (org-scoped).
`record`	`smart_action`	Record a calibration event for a fleet instrument and roll its outcome onto the instrument (calibration_status, last_calibration_date, next_calibration_due).
`update`	`entity_crud`	Partially update an exact-organization calibration event row.

`calibration_due`

Operation	Mega-tool	What it does
`query`	`report_query`	Instruments with calibration or service/maintenance due or overdue within horizon_days (default 30).

`catalog_lookup`

Operation	Mega-tool	What it does
`query`	`report_query`	Knowledge query: given an analyte (name or code, optional coding_system) OR a category code, return the instrument categories (device types), catalogued…

`catalog_model_proposal`

Operation	Mega-tool	What it does
`approve`	`smart_action`	Approve one pending exact-organization proposal as a platform curator.
`create`	`smart_action`	Create an exact-organization proposal for governed platform review; this never writes a global catalog row.
`list`	`entity_crud`	List catalog model proposal in the current organization.
`promote`	`smart_action`	Promote one approved exact-organization proposal to the global catalog; service authority is restricted to platform curators.
`read`	`entity_crud`	Read one catalog model proposal row in the current organization.
`reconcile`	`smart_action`	Reconcile up to 500 explicit exact-organization instruments to the promoted model while preserving append-only prior identity evidence.
`reject`	`smart_action`	Reject one pending exact-organization proposal as a platform curator.

`coding_system`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private coding system catalog row.
`delete`	`entity_crud`	Delete an organization-private coding system row.
`list`	`entity_crud`	List coding system from the effective global plus org catalog.
`read`	`entity_crud`	Read one coding system row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private coding system row.

`discipline`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private laboratory discipline catalog row.
`delete`	`entity_crud`	Delete an organization-private laboratory discipline row.
`list`	`entity_crud`	List laboratory discipline from the effective global plus org catalog.
`read`	`entity_crud`	Read one laboratory discipline row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private laboratory discipline row.

`domain`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private laboratory domain catalog row.
`delete`	`entity_crud`	Delete an organization-private laboratory domain row.
`list`	`entity_crud`	List laboratory domain from the effective global plus org catalog.
`read`	`entity_crud`	Read one laboratory domain row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private laboratory domain row.

`fleet_summary`

Operation	Mega-tool	What it does
`query`	`report_query`	Fleet rollup for the current org: total instruments, counts by status (active / maintenance / quarantine / retired), a 'down' (non-active) count, the…

`guide`

Operation	Mega-tool	What it does
`query`	`report_query`	Laboratory agent playbook: the capture loop (register -> ingest -> release -> amend), QC/Westgard, calibration, the reading_file/attach byte lane, the report…

`ingest_curation`

Operation	Mega-tool	What it does
`list`	`entity_crud`	List ingest curation item in the current organization.
`read`	`entity_crud`	Read one ingest curation item row in the current organization.
`resolve`	`smart_action`	Resolve one pending exact-organization ingest curation item to visible catalog rows, persist the required audit event atomically, and enqueue idempotent…

`ingest_health`

Operation	Mega-tool	What it does
`query`	`report_query`	Ingest health over a window (default 7 days): raw-message counts by status and by connector, plus the current dead-letter depth (all-time).

`ingest_message`

Operation	Mega-tool	What it does
`list`	`entity_crud`	List PHI-safe durable ingest message status in the current organization.
`read`	`entity_crud`	Read one PHI-safe durable ingest message status row in the current organization.
`retry`	`smart_action`	Re-drive one non-mapped durable message belonging to an exact-org, non-retired instrument.

`instrument_category`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private instrument category catalog row.
`delete`	`entity_crud`	Delete an organization-private instrument category row.
`list`	`entity_crud`	List instrument categories (device types; global catalog ∪ org overrides).
`read`	`entity_crud`	Read a single instrument category by id (global ∪ org-override scoped).
`update`	`entity_crud`	Partially update an organization-private instrument category row.

`instrument_health`

Operation	Mega-tool	What it does
`query`	`report_query`	Return safe connectivity health plus a paged PHI-free ingest log for one exact-org instrument.

`instrument_instance`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Thin add of a physical instrument (org server-stamped).
`decommission`	`smart_action`	Retire one exact-organization instrument with an end-of-life date and bounded reason.
`delete`	`entity_crud`	Soft-delete a fleet instrument (org-scoped; audit trail preserved).
`list`	`entity_crud`	List physical instruments in the current org's fleet.
`read`	`entity_crud`	Read a single fleet instrument by id (org-scoped).
`register`	`smart_action`	Register a physical instrument into a lab's fleet by device type (D10).
`test_connection`	`smart_action`	Run a bounded connection test using only the instrument's server-owned driver_profile.
`update`	`entity_crud`	Update a fleet instrument (partial; org-scoped).

`instrument_model`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create a PER-ORG PRIVATE instrument-model override (D4) — organization is server-stamped, never global.
`delete`	`entity_crud`	Delete (hard) a PER-ORG PRIVATE instrument-model override.
`list`	`entity_crud`	List catalogued instrument make/models (global catalog ∪ org overrides).
`read`	`entity_crud`	Read a single instrument model by id (global ∪ org-override scoped).
`suggest`	`smart_action`	Propose a new catalog instrument model for human curation.
`update`	`entity_crud`	Update a PER-ORG PRIVATE instrument-model override (partial).

`instrument_utilization`

Operation	Mega-tool	What it does
`query`	`report_query`	Reading throughput per instrument over a window (default 30 days): readings count, readings/day, and the idle instruments (zero readings in the window).

`interchange_protocol`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private interchange protocol catalog row.
`delete`	`entity_crud`	Delete an organization-private interchange protocol row.
`list`	`entity_crud`	List interchange protocol from the effective global plus org catalog.
`read`	`entity_crud`	Read one interchange protocol row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private interchange protocol row.

`laboratory`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create a physical lab site in the current organization (org is server-stamped).
`delete`	`entity_crud`	Soft-delete a lab site (org-scoped; ISO-17025 audit trail preserved).
`list`	`entity_crud`	List physical lab sites in the current organization.
`read`	`entity_crud`	Read a single lab site by id (org-scoped).
`update`	`entity_crud`	Update a lab site (partial — only supplied keys change; org-scoped).

`legal_hold`

Operation	Mega-tool	What it does
`place`	`smart_action`	Place an organization, scope, or exact-record Laboratory legal hold.
`release`	`smart_action`	Release an active Laboratory legal hold by appending a release event.

`maintenance_event`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an exact-organization maintenance event row.
`delete`	`entity_crud`	Soft-delete an exact-organization maintenance event row.
`list`	`entity_crud`	List maintenance event in the current organization.
`read`	`entity_crud`	Read one maintenance event row in the current organization.
`update`	`entity_crud`	Partially update an exact-organization maintenance event row.

`manufacturer`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private manufacturer catalog row.
`delete`	`entity_crud`	Delete an organization-private manufacturer row.
`list`	`entity_crud`	List instrument manufacturers (global catalog ∪ this org's overrides).
`read`	`entity_crud`	Read a single instrument manufacturer by id (global ∪ org-override scoped).
`update`	`entity_crud`	Partially update an organization-private manufacturer row.

`method`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private measurement method catalog row.
`delete`	`entity_crud`	Delete an organization-private measurement method row.
`list`	`entity_crud`	List measurement method from the effective global plus org catalog.
`read`	`entity_crud`	Read one measurement method row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private measurement method row.

`out_of_range`

Operation	Mega-tool	What it does
`query`	`report_query`	Sweep reading values outside their reference/spec over a window (default 7 days).

`qc_run`

Operation	Mega-tool	What it does
`acknowledge`	`smart_action`	Acknowledge a QC result by appending an immutable audit annotation; the QualityControlRun evidence row is never modified.
`create`	`entity_crud`	Create an exact-organization quality control run row.
`create`	`smart_action`	Record a QC measurement and evaluate configured Westgard rules: 1-2s warning and 1-3s / 2-2s / R-4s / 4-1s / 10x rejection.
`list`	`entity_crud`	List QC runs in the current org (writes via qc_run/create).
`read`	`entity_crud`	Read a single QC run by id (org-scoped).
`update`	`entity_crud`	Partially update an exact-organization quality control run row.

`qc_westgard`

Operation	Mega-tool	What it does
`query`	`report_query`	QC/Levey-Jennings series over a window with complete dated points, mean and ±1/2/3 SD bands, warnings, rejecting rules and per-rule tally.

`reading`

Operation	Mega-tool	What it does
`amend`	`smart_action`	Create an append-only corrected reading version with a required reason.
`ingest`	`smart_action`	Ingest a reading against an assay: validates each submitted value against the assay's ResultFieldSpecs (unknown field, missing-required, bad type, and…
`list`	`entity_crud`	List instrument readings in the current org (writes via reading/ingest).
`read`	`entity_crud`	Read a single instrument reading by id (org-scoped).
`release`	`smart_action`	Release a retained preliminary reading only when its server-owned assay QC gate passes.

`reading_file`

Operation	Mega-tool	What it does
`attach`	`smart_action`	Attach a bounded-modality file artifact (report, spectrum, chromatogram, waveform, image) to an existing reading.
`list`	`entity_crud`	List reading file artifacts (object-storage pointers) in the current org.
`read`	`entity_crud`	Read a single reading file record by id (org-scoped).

`reading_series`

Operation	Mega-tool	What it does
`query`	`report_query`	Time series of a single analyte over a window for a chart widget.

`reading_value`

Operation	Mega-tool	What it does
`list`	`entity_crud`	List extracted reading values (org-scoped).
`read`	`entity_crud`	Read a single reading value by id (org-scoped).

`reference_range`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private reference range catalog row.
`delete`	`entity_crud`	Delete an organization-private reference range row.
`list`	`entity_crud`	List reference range from the effective global plus org catalog.
`read`	`entity_crud`	Read one reference range row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private reference range row.

`result_field_spec`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private result field specification catalog row.
`delete`	`entity_crud`	Delete an organization-private result field specification row.
`list`	`entity_crud`	List result field specification from the effective global plus org catalog.
`read`	`entity_crud`	Read one result field specification row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private result field specification row.

`retention`

Operation	Mega-tool	What it does
`query`	`report_query`	List immutable policy/hold versions and optionally evaluate one exact-org Laboratory record.

`retention_policy`

Operation	Mega-tool	What it does
`purge_file`	`smart_action`	Purge eligible ReadingFile metadata only after storage-object absence has been independently confirmed.
`set`	`smart_action`	Append a versioned organization Laboratory retention policy.

`retention_regime`

Operation	Mega-tool	What it does
`query`	`report_query`	List server-approved retention regimes and their allowed scopes/minimums.

`specimen`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an exact-organization specimen row.
`delete`	`entity_crud`	Soft-delete an exact-organization specimen row.
`list`	`entity_crud`	List specimen in the current organization.
`read`	`entity_crud`	Read one specimen row in the current organization.
`update`	`entity_crud`	Partially update an exact-organization specimen row.

`specimen_type`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private specimen type catalog row.
`delete`	`entity_crud`	Delete an organization-private specimen type row.
`list`	`entity_crud`	List specimen type from the effective global plus org catalog.
`read`	`entity_crud`	Read one specimen type row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private specimen type row.

`test_order`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an exact-organization test order row.
`delete`	`entity_crud`	Soft-delete an exact-organization test order row.
`list`	`entity_crud`	List test order in the current organization.
`read`	`entity_crud`	Read one test order row in the current organization.
`update`	`entity_crud`	Partially update an exact-organization test order row.

`test_run`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Open a test run on a fleet instrument for an assay (org server-stamped).
`list`	`entity_crud`	List instrument test runs in the current org.
`read`	`entity_crud`	Read a single test run by id (org-scoped).
`update`	`entity_crud`	Partially update an exact-organization test run row.

`traceability_chain`

Operation	Mega-tool	What it does
`query`	`report_query`	The ISO-17025 traceability chain for one reading, using the accepted calibration actually in effect at observation time (never a future/latest-now event).

`unit_of_measure`

Operation	Mega-tool	What it does
`create`	`entity_crud`	Create an organization-private unit of measure catalog row.
`delete`	`entity_crud`	Delete an organization-private unit of measure row.
`list`	`entity_crud`	List unit of measure from the effective global plus org catalog.
`read`	`entity_crud`	Read one unit of measure row visible to the current organization.
`update`	`entity_crud`	Partially update an organization-private unit of measure row.

Parameter schemas and permission codenames are in the full reference — sign in — or call prism_introspect(dimension="capability_search", query="…") with your key.

In the full reference this application appears under entity_crud, report_query, smart_action.